Coagulation:Article Title: [1703.10524] Comparative genomic analysis of the human gut microbiome reveals a broad distribution of metabolic pathways for the degradation of host-synthetized mucin glycans
Article Snippet: Gal GalNAc - GlcNAc - Organism name PubSEED ID IMG ID Gene ID Locus Tag Gene Name Length Percent Identity 642612071 Amuc_0031 hypothetical protein 291 51.2 Akkermansia muciniphila ATCC BAA-835 349741.6 642555104 642612074 Amuc_0034 prolyl-tRNA synthetase (EC 6.1.1.15) 506 49.1 Bacteroides fragilis 638R 862962.3 650377910 642612078 Amuc_0037 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)494 59.2 Bacteroides fragilis NCTC 9343 272559.17 2623620861 642612103 Amuc_0060 Alpha-N-acetylglucosaminidase 848 46.4 Bacteroides fragilis YCH46 295405.11 2623620898 642612150 Amuc_0105 RND efflux system, outer membrane lipoprotein, NodT family 457 32.9 Bacteroides thetaiotaomicron VPI-5482 226186.12 2623620899 642612162 Amuc_0117 agmatine deiminase (EC 3.5.3.12) 351 38.3 Bacteroides vulgatus ATCC 8482 435590.9 2623620366 642612193 Amuc_0148 carboxynorspermidine dehydrogenase 409 61 Bacteroides xylanisolvens XB1A 657309.4 650377911 642612252 Amuc_0206 succinate CoA transferase 498 89.1 Parabacteroides distasonis ATCC 8503 435591.13 2623620331 642612344 Amuc_0290 glycoside hydrolase family 2 sugar binding 986 44 642612420 Amuc_0369 Beta-N-acetylhexosaminidase 665 38.3 Bacillus subtilis subsp. subtilis str. .. 168 224308.113 646311909 642612443 Amuc_0392 coagulation factor 5/8 type domain protein 709 44.1 Bifidobacterium animalis subsp. lactis AD011 442563.4 643348515 642612504 Amuc_0454 protein of unknown function DUF303 acetylesterase putative 512 39.4 Bifidobacterium longum DJO10A 205913.11 642555107 642612541 Amuc_0491 sulfatase 500 38.8 Bifidobacterium longum NCC2705 206672.9 637000031 642612658 Amuc_0607 Endonuclease/exonuclease/phosphatase 253 51.7 Bifidobacterium longum subsp. infantis 157F 565040.3 649633017 642612671 Amuc_0620 NAD+ synthetase 644 51.6 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 391904.8 651053007 642612753 Amuc_0701 transcriptional regulator, LysR family 307 42.8 Bifidobacterium longum subsp. longum F8 722911.3 650377912 642612756 Amuc_0704 hypothetical protein 417 50.2 Bifidobacterium longum subsp. longum JCM 1217 565042.3 649633019 642612824 Amuc_0773 acyltransferase 3 382 49.5 Butyrivibrio fibrisolvens 16/4 657324.3 650377919 642612901 Amuc_0846 coagulation factor 5/8 type domain protein 704 43.2 Coprococcus catus GD/7 717962.3 650377925 642612923 Amuc_0868 Beta-N-acetylhexosaminidase 549 39.2 Coprococcus sp. ART55/1 751585.3 2565956545 642613016 Amuc_0962 4Fe-4S ferredoxin iron-sulfur binding domain protein 588 37.9 Enterococcus sp. 7L76 657310.3 650377930 642613081 Amuc_1032 Beta-N-acetylhexosaminidase 518 34.4 Escherichia coli O157:H7 str. .. 168 224308.113 646311909 642612443 Amuc_0392 coagulation factor 5/8 type domain protein 709 44.1 Bifidobacterium animalis subsp. lactis AD011 442563.4 643348515 642612504 Amuc_0454 protein of unknown function DUF303 acetylesterase putative 512 39.4 Bifidobacterium longum DJO10A 205913.11 642555107 642612541 Amuc_0491 sulfatase 500 38.8 Bifidobacterium longum NCC2705 206672.9 637000031 642612658 Amuc_0607 Endonuclease/exonuclease/phosphatase 253 51.7 Bifidobacterium longum subsp. infantis 157F 565040.3 649633017 642612671 Amuc_0620 NAD+ synthetase 644 51.6 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 391904.8 651053007 642612753 Amuc_0701 transcriptional regulator, LysR family 307 42.8 Bifidobacterium longum subsp. longum F8 722911.3 650377912 642612756 Amuc_0704 hypothetical protein 417 50.2 Bifidobacterium longum subsp. longum JCM 1217 565042.3 649633019 642612824 Amuc_0773 acyltransferase 3 382 49.5 Butyrivibrio fibrisolvens 16/4 657324.3 650377919 642612901 Amuc_0846 coagulation factor 5/8 type domain protein 704 43.2 Coprococcus catus GD/7 717962.3 650377925 642612923 Amuc_0868 Beta-N-acetylhexosaminidase 549 39.2 Coprococcus sp. ART55/1 751585.3 2565956545 642613016 Amuc_0962 4Fe-4S ferredoxin iron-sulfur binding domain protein 588 37.9 Enterococcus sp. 7L76 657310.3 650377930 642613081 Amuc_1032 Beta-N-acetylhexosaminidase 518 34.4 Escherichia coli O157:H7 str.
Binding Assay:Article Title: [1703.10524] Comparative genomic analysis of the human gut microbiome reveals a broad distribution of metabolic pathways for the degradation of host-synthetized mucin glycans
Article Snippet: Gal GalNAc - GlcNAc - Organism name PubSEED ID IMG ID Gene ID Locus Tag Gene Name Length Percent Identity 642612071 Amuc_0031 hypothetical protein 291 51.2 Akkermansia muciniphila ATCC BAA-835 349741.6 642555104 642612074 Amuc_0034 prolyl-tRNA synthetase (EC 6.1.1.15) 506 49.1 Bacteroides fragilis 638R 862962.3 650377910 642612078 Amuc_0037 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)494 59.2 Bacteroides fragilis NCTC 9343 272559.17 2623620861 642612103 Amuc_0060 Alpha-N-acetylglucosaminidase 848 46.4 Bacteroides fragilis YCH46 295405.11 2623620898 642612150 Amuc_0105 RND efflux system, outer membrane lipoprotein, NodT family 457 32.9 Bacteroides thetaiotaomicron VPI-5482 226186.12 2623620899 642612162 Amuc_0117 agmatine deiminase (EC 3.5.3.12) 351 38.3 Bacteroides vulgatus ATCC 8482 435590.9 2623620366 642612193 Amuc_0148 carboxynorspermidine dehydrogenase 409 61 Bacteroides xylanisolvens XB1A 657309.4 650377911 642612252 Amuc_0206 succinate CoA transferase 498 89.1 Parabacteroides distasonis ATCC 8503 435591.13 2623620331 642612344 Amuc_0290 glycoside hydrolase family 2 sugar binding 986 44 642612420 Amuc_0369 Beta-N-acetylhexosaminidase 665 38.3 Bacillus subtilis subsp. subtilis str. .. 168 224308.113 646311909 642612443 Amuc_0392 coagulation factor 5/8 type domain protein 709 44.1 Bifidobacterium animalis subsp. lactis AD011 442563.4 643348515 642612504 Amuc_0454 protein of unknown function DUF303 acetylesterase putative 512 39.4 Bifidobacterium longum DJO10A 205913.11 642555107 642612541 Amuc_0491 sulfatase 500 38.8 Bifidobacterium longum NCC2705 206672.9 637000031 642612658 Amuc_0607 Endonuclease/exonuclease/phosphatase 253 51.7 Bifidobacterium longum subsp. infantis 157F 565040.3 649633017 642612671 Amuc_0620 NAD+ synthetase 644 51.6 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 391904.8 651053007 642612753 Amuc_0701 transcriptional regulator, LysR family 307 42.8 Bifidobacterium longum subsp. longum F8 722911.3 650377912 642612756 Amuc_0704 hypothetical protein 417 50.2 Bifidobacterium longum subsp. longum JCM 1217 565042.3 649633019 642612824 Amuc_0773 acyltransferase 3 382 49.5 Butyrivibrio fibrisolvens 16/4 657324.3 650377919 642612901 Amuc_0846 coagulation factor 5/8 type domain protein 704 43.2 Coprococcus catus GD/7 717962.3 650377925 642612923 Amuc_0868 Beta-N-acetylhexosaminidase 549 39.2 Coprococcus sp. ART55/1 751585.3 2565956545 642613016 Amuc_0962 4Fe-4S ferredoxin iron-sulfur binding domain protein 588 37.9 Enterococcus sp. 7L76 657310.3 650377930 642613081 Amuc_1032 Beta-N-acetylhexosaminidase 518 34.4 Escherichia coli O157:H7 str. .. 168 224308.113 646311909 642612443 Amuc_0392 coagulation factor 5/8 type domain protein 709 44.1 Bifidobacterium animalis subsp. lactis AD011 442563.4 643348515 642612504 Amuc_0454 protein of unknown function DUF303 acetylesterase putative 512 39.4 Bifidobacterium longum DJO10A 205913.11 642555107 642612541 Amuc_0491 sulfatase 500 38.8 Bifidobacterium longum NCC2705 206672.9 637000031 642612658 Amuc_0607 Endonuclease/exonuclease/phosphatase 253 51.7 Bifidobacterium longum subsp. infantis 157F 565040.3 649633017 642612671 Amuc_0620 NAD+ synthetase 644 51.6 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 391904.8 651053007 642612753 Amuc_0701 transcriptional regulator, LysR family 307 42.8 Bifidobacterium longum subsp. longum F8 722911.3 650377912 642612756 Amuc_0704 hypothetical protein 417 50.2 Bifidobacterium longum subsp. longum JCM 1217 565042.3 649633019 642612824 Amuc_0773 acyltransferase 3 382 49.5 Butyrivibrio fibrisolvens 16/4 657324.3 650377919 642612901 Amuc_0846 coagulation factor 5/8 type domain protein 704 43.2 Coprococcus catus GD/7 717962.3 650377925 642612923 Amuc_0868 Beta-N-acetylhexosaminidase 549 39.2 Coprococcus sp. ART55/1 751585.3 2565956545 642613016 Amuc_0962 4Fe-4S ferredoxin iron-sulfur binding domain protein 588 37.9 Enterococcus sp. 7L76 657310.3 650377930 642613081 Amuc_1032 Beta-N-acetylhexosaminidase 518 34.4 Escherichia coli O157:H7 str.
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